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gene expression cancer RNA-Seq Data Set
Download: Data Folder, Data Set Description

Abstract: This collection of data is part of the RNA-Seq (HiSeq) PANCAN data set, it is a random extraction of gene expressions of patients having different types of tumor: BRCA, KIRC, COAD, LUAD and PRAD.

Data Set Characteristics:  

Multivariate

Number of Instances:

801

Area:

Life

Attribute Characteristics:

Real

Number of Attributes:

20531

Date Donated

2016-06-09

Associated Tasks:

Classification, Clustering

Missing Values?

N/A

Number of Web Hits:

35250

Source:

Samuele Fiorini, samuele.fiorini '@' dibris.unige.it, University of Genoa, redistributed under Creative Commons license (http://creativecommons.org/licenses/by/3.0/legalcode) from https://www.synapse.org/#!Synapse:syn4301332.


Data Set Information:

Samples (instances) are stored row-wise. Variables (attributes) of each sample are RNA-Seq gene expression levels measured by illumina HiSeq platform.


Attribute Information:

A dummy name (gene_XX) is given to each attribute. Check the original submission ([Web Link]#!Synapse:syn4301332), or the platform specs for the complete list of probes name. The attributes are ordered consitently with the original submission.


Relevant Papers:

Weinstein, John N., et al. 'The cancer genome atlas pan-cancer analysis project.' Nature genetics 45.10 (2013): 1113-1120.



Citation Request:

The original data set (hosted at [Web Link]#!Synapse:syn4301332) is maintained by the cancer genome atlas pan-cancer analysis project.

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