Center for Machine Learning and Intelligent Systems 		About  Citation Policy  Donate a Data Set  Contact


Repository Web            Google
View ALL Data Sets

× Check out the beta version of the new UCI Machine Learning Repository we are currently testing! Contact us if you have any issues, questions, or concerns. Click here to try out the new site.

gene expression cancer RNA-Seq Data Set
Download: Data Folder, Data Set Description

Abstract: This collection of data is part of the RNA-Seq (HiSeq) PANCAN data set, it is a random extraction of gene expressions of patients having different types of tumor: BRCA, KIRC, COAD, LUAD and PRAD.

Data Set Characteristics:  

Multivariate

Number of Instances:

801

Area:

Life

Attribute Characteristics:

Real

Number of Attributes:

20531

Date Donated

2016-06-09

Associated Tasks:

Classification, Clustering

Missing Values?

N/A

Number of Web Hits:

95255

Source:

Samuele Fiorini, samuele.fiorini '@' dibris.unige.it, University of Genoa, redistributed under Creative Commons license (http://creativecommons.org/licenses/by/3.0/legalcode) from https://www.synapse.org/#!Synapse:syn4301332.


Data Set Information:

Samples (instances) are stored row-wise. Variables (attributes) of each sample are RNA-Seq gene expression levels measured by illumina HiSeq platform.


Attribute Information:

A dummy name (gene_XX) is given to each attribute. Check the original submission ([Web Link]#!Synapse:syn4301332), or the platform specs for the complete list of probes name. The attributes are ordered consitently with the original submission.


Relevant Papers:

Weinstein, John N., et al. 'The cancer genome atlas pan-cancer analysis project.' Nature genetics 45.10 (2013): 1113-1120.



Citation Request:

The original data set (hosted at [Web Link]#!Synapse:syn4301332) is maintained by the cancer genome atlas pan-cancer analysis project.

Supported By:

 In Collaboration With:
About  ||  Citation Policy  ||  Donation Policy  ||  Contact  ||  CML